1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgctggtcagccccccgacaatcctgctgctggcactcggcatcgggagcgggttaaagtacgcacgtgctgaccagagccccgcacccgtccacgcagCTGGAACGTGGAGAAGGTCATTGTGCTGCCCGAGGATGCTTTCCTCCTGGACTACGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06383 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gggagcgggttaaagtacgcacgtgctgaccagagccccgcacccgtccacgcagCTGGAACGTGGAGAAGGTCATTGTGCTGCCCGAGGATGCTTTCCTCCTGGACTACGCAG
tgctgac putative branch site (score: 2)
cccgtcc putative PPT
ttaaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctggtcagccccccgacaatcctgctgctggcactcggcatcgggagcgggttaaagtacgcacgtgctgaccagagccccgcacccgtccacgcagCTGGAACGTGGAGAAGGTCATTGTGCTGCCCGAGGATGCTTTCCTCCTGGACTACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - acaatcc
- - - - - - - - - - - - - - - - -gcactcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgcac