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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgcgcgcgtgtatgtcgtgcatcgggcgggtgtggcaatcaacgaaacgccgcatgcagagcataagtaccgcacgctcttgtagtgactgctgtctaaagcccataccagctgctcgtgttttgtcgcaaccaactatctaaaagataaccgaattgtcgccaactgccaacgtcaaactgttgcgccacagGCCTGGCTCCGATCCCAAGGGCTGCACGTGCTGCAGGCCAGTGCGCGCAGCGGCTGCGTGCACATCGTGGCGGACGTCGTGCGCATGCCGCCGCAGCAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06380
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaaaagataaccgaattgtcgccaactgccaacgtcaaactgttgcgccacagGCCTGGCTCCGATCCCAAGGGCTGCACGTGCTGCAGGCCAGTGCGCGCAGCGGCTGCGTGCACATCGTGGCGGACGTCGTGCGCATGCCGCCGCAGCAGC
      agataac  putative branch site (score: 3)
     aagataa  TA-rich tract