Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgtcgcttcctgtccaaaatcgcgagcgttacctaaagacatggcggtactgttggggatcggttgcgcagGCCTCGGCGAGCCAGCCAAGCGGGTCAGCGCCGGCCGGCCCCGCCCGGCACGCGGTGTTGCACGATTTCTGCATGGTCATCCCCTTCGGCGGTGCCGCGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06375
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22059353|gb|BQ813391.1|BQ813391
EST:     CGGCATCCACATCTAGGGCCAGCCGTGGAGCACTGACCTGCCGCGCATCG                         GCCTCGGCGAGCCAGCCAAGCGGGTCAGCGCCGGCCGGCCCCGCCCGGCAC
genomic: CGACATCCACATCTAGGGCCAGCCGTGGAGCACTGACCTGCCGCGCATCGgtaaactgtc ... ggttgcgcagGCCTCGGCGAGCCAGCCAAGCGGGTCAGCGCCGGCCGGCCCCGCCCGGCAC
EST: gi|10794246|gb|AV631612.1|AV631612
EST:     CGACATCCACATCTAGGGCCAGCCGTGGAGCACTGACCTGCCGCGCATCG                         GCCTCGGCGAGCCAGCCAAGCGGGTCAGCGCCGGCCGGCCCCGCCCGGCAC
genomic: CGACATCCACATCTAGGGCCAGCCGTGGAGCACTGACCTGCCGCGCATCGgtaaactgtc ... ggttgcgcagGCCTCGGCGAGCCAGCCAAGCGGGTCAGCGCCGGCCGGCCCCGCCCGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcgcgagcgttacctaaagacatggcggtactgttggggatcggttgcgcagGCCTCGGCGAGCCAGCCAAGCGGGTCAGCGCCGGCCGGCCCCGCCCGGCACGCGGTGTTGCACGATTTCTGCATGGTCATCCCCTTCGGCGGTGCCGCGG
              acctaaa  putative branch site (score: 3)