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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggttggatctggtggatgggcaggatgggttgggatcaccgctgttacgatgctacgttgcattatggcatgtatatgtgtgtgtcccgccacctcttccaccacacactgacccgcatctctctcttacctgctcccccccccgccacacacacacacatattgctccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTCGTGTTCGGCATCAGCTCGGACTCGCCCGCTGACAACGCCGCCTTCGGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP06371
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15696101|gb|BI720406.1|BI720406
EST:     GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAG                         GCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
genomic: GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAGgtgcggttgg ... ccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
EST: gi|10793801|gb|AV631167.1|AV631167
EST:     GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAG                         GCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
genomic: GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAGgtgcggttgg ... ccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
EST: gi|15700761|gb|BI725066.1|BI725066
EST:     GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAG                         GCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
genomic: GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAGgtgcggttgg ... ccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
EST: gi|15371918|gb|BI531344.1|BI531344
EST:     GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAG                         GCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
genomic: GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAGgtgcggttgg ... ccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
EST: gi|16432184|gb|BI997410.1|BI997410
EST:     GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAG                         GCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC
genomic: GTTCTGTTCTTCTACCCCAAGGCTGCCACCCCCGGCTGCACCAAGGAGgtgcggttgg ... ccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttacctgctcccccccccgccacacacacacacatattgctccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTCGTGTTCGGCATCAGCTCGGACTCGCCCGCTGACAACGCCGCCTTCGGCA
 ctcttac  putative branch site (score: 3)
                                      tattgctccctctcc  putative PPT
                                   acatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggttggatctggtggatgggcaggatgggttgggatcaccgctgttacgatgctacgttgcattatggcatgtatatgtgtgtgtcccgccacctcttccaccacacactgacccgcatctctctcttacctgctcccccccccgccacacacacacacatattgctccctctccagGCTTGCCGCTTCCGTGACGAGTACAGCCGCTTCACTGCCGCCGGCGCCGTCGTGTTCGGCATCAGCTCGGACTCGCCCGCTGACAACGCCGCCTTCGGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC