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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCATGAACAACAACAAGCTAGACGAGGCGGCCATTTTGGCCGGATGCAAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgatacacatgtattatggccgcggtcggcctgactgtatccaaacgagaagcgcgaatggggcgatgtggttgtgccttggagccttcccggaaacccaagtttcctaacgagtcgaatgtatatgcctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06355
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697434|gb|BI721739.1|BI721739
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|22070742|gb|BQ820080.1|BQ820080
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161794267|gb|FC081649.1|FC081649
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|9028321|gb|BE238361.1|BE238361
EST:     GTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: GTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|14240466|gb|BG859282.1|BG859282
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|14242094|gb|BG860910.1|BG860910
EST:     AAGGGTGTGTTCAGCAAGACCAGGTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|16430925|gb|BI996151.1|BI996151
EST:     AAGGGTGTGTTCAGCAAGACCAGTTGCATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCA
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCA
EST: gi|8401094|gb|BE056728.1|BE056728
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|14242021|gb|BG860837.1|BG860837
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161807964|gb|FC097569.1|FC097569
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|22066689|gb|BQ817082.1|BQ817082
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161818114|gb|FC102275.1|FC102275
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161802719|gb|FC089137.1|FC089137
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|22070741|gb|BQ820079.1|BQ820079
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161811408|gb|FC097990.1|FC097990
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|23366648|gb|BU654467.1|BU654467
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|15702963|gb|BI727268.1|BI727268
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|16435561|gb|BM000781.1|BM000781
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|16072799|gb|BI874795.1|BI874795
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|8287317|gb|BE024876.1|BE024876
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGCTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161803940|gb|FC093855.1|FC093855
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161810920|gb|FC099673.1|FC099673
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161817918|gb|FC103613.1|FC103613
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161796564|gb|FC082894.1|FC082894
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|15372350|gb|BI531776.1|BI531776
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GTAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161823303|gb|FC110110.1|FC110110
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
EST: gi|161812385|gb|FC095055.1|FC095055
EST:     AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGG                         GAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG
genomic: AAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgat ... atgcctgcagGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACCATGAACAACAACAAGCTAGACGAGGCGGCCATTTTGGCCGGATGCAAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGgtaagctgatacacatgtattatggccgcggtcggcctgactgtatccaaacgagaagcgcgaatggggcgatgtggttgtgccttggagccttcccggaaacccaagtttcctaacgagtcgaatgtatatgcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG