1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGGCGCGGGCATGCATGCGGAGGTGGTGCGCAAGATTGAGAAGTGGCAGGAGCCGCCGCCCGCCAAGCAGATCAAGCCGCTGCCGGTGCCAGACGCAGAGgtgcgctgccgccgcgctgacggcacttgactttgtagacgctgtcagcggcatgctgcaggcgggttggctggggcagctgaagtggatgcgggtgaaa...
species | Chlamydomonas reinhardtii |
transcript | EDP06349 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCCGCCGCCCGCCAAGCAGATCAAGCCGCTGCCGGTGCCAGACGCAGAG CAAAAGAAGCGGCGCGGCGGCCGGCGGCTGCGCAAGATGAAGGAGCGGTACEST: gi|15696918|gb|BI721223.1|BI721223
genomic: AGCCGCCGCCCGCCAAGCAGATCAAGCCGCTGCCGGTGCCAGACGCAGAGgtgcgctgcc ... gatcccacagCAAAAGAAGCGGCGCGGCGGCCGGCGGCTGCGCAAGATGAAGGAGCGGTAC
EST: AGCCGCCGCCCGCCAAGCAGATCAAGCCGCTGCCGGTGCCAGACGCAGAG CAAAAGAAGCGGCGCGGCGGCCGGCGGCTGCGCAAGATGAAGGAGCGGTAC
genomic: AGCCGCCGCCCGCCAAGCAGATCAAGCCGCTGCCGGTGCCAGACGCAGAGgtgcgctgcc ... gatcccacagCAAAAGAAGCGGCGCGGCGGCCGGCGGCTGCGCAAGATGAAGGAGCGGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGCGGGCATGCATGCGGAGGTGGTGCGCAAGATTGAGAAGTGGCAGGAGCCGCCGCCCGCCAAGCAGATCAAGCCGCTGCCGGTGCCAGACGCAGAGgtgcgctgccgccgcgctgacggcacttgactttgtagacgctgtcagcggcatgctgcaggcgggttggctggggcagctgaagtggatgcgggtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgggt