1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgttagcacgcccgaacccagcaacgcccttttgacatgccaaccgtaacgcctcctccgcgctctgtgtgcctggtcgctcggtcgctccccccgcagGAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTTGAGGTGCCGGACATGCTGGCGCGGGCCGAGCTGTTCCCCTACACCAAGC
species | Chlamydomonas reinhardtii |
transcript | EDP06333 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGGACAAGGCGCGCACTTGTGCGCGGGAATGGTGCTGGTGACGCTG GAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTTEST: gi|23363964|gb|BU651784.1|BU651784
genomic: TCTTTGGACAAGGCGCGCACTTGTGCGCGGGAATGGTGCTGGTGACGCTGgtacgtttgt ... ccccccgcagGAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTT
EST: AAGGCGCGCACTTGTGCGCGGGAATGGTGCTGGTGACGCTG GAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTT
genomic: AAGGCGCGCACTTGTGCGCGGGAATGGTGCTGGTGACGCTGgtacgtttgt ... ccccccgcagGAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTT
cgtaacgcctcctccgcgctctgtgtgcctggtcgctcggtcgctccccccgcagGAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTTGAGGTGCCGGACATGCTGGCGCGGGCCGAGCTGTTCCCCTACACCAAGC
ccgtaac putative branch site (score: 3)
tcgctcccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttagcacgcccgaacccagcaacgcccttttgacatgccaaccgtaacgcctcctccgcgctctgtgtgcctggtcgctcggtcgctccccccgcagGAGGTGAAGCTGCTACTGGCCATGGTGCTGCGCAAGTGGCGGCTGCAGCTTGAGGTGCCGGACATGCTGGCGCGGGCCGAGCTGTTCCCCTACACCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - -cacgccc
- - - - - - - -aacccag
- - - - - - - - - - - - - - - - - -acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcct