1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccgtagcccccgccaaacgaggccaaacatgctatgtcagtgccttgcatcttcaccactccactacgccacgccgcatgcgcgcatgccgtaccctcagGATCTGGGCGCTGTACCGCGGCACCTCCTTTGACGAGGTGCTGCTGCTGGACGCGGACAGCGTGCCGCTGGTGCAACCCGAAGAGCTGTTCGAAACCCCC
species | Chlamydomonas reinhardtii |
transcript | EDP06328 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tgcatcttcaccactccactacgccacgccgcatgcgcgcatgccgtaccctcagGATCTGGGCGCTGTACCGCGGCACCTCCTTTGACGAGGTGCTGCTGCTGGACGCGGACAGCGTGCCGCTGGTGCAACCCGAAGAGCTGTTCGAAACCCCC
taccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgtagcccccgccaaacgaggccaaacatgctatgtcagtgccttgcatcttcaccactccactacgccacgccgcatgcgcgcatgccgtaccctcagGATCTGGGCGCTGTACCGCGGCACCTCCTTTGACGAGGTGCTGCTGCTGGACGCGGACAGCGTGCCGCTGGTGCAACCCGAAGAGCTGTTCGAAACCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - -caaacga
- - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgcc