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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgggctgtgggagagtgtgtggtgtgggcgggctgtggcacatggcaggctctggcacgctcgggtcctgatcggggctggacgtcatggatgtcagctcatgtgtaagcatttgaatgtgtgccagcacttgactaccagtgtacggcaaatactgtgccctggaatcgcagATGAACGACCCTCGTGGCTCGGCGGCCTACGATGACGGCTACCGGCAACCCATTGTTGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06327
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23367172|gb|BU654991.1|BU654991
EST:     GGGGCATGCGCGTGTACGACAGCGTCGCGCGGTCCAACAGCTACCCCGAG                         ATGAACGACCCTCGTGGCTCGGCGGCCTACGATGACGGCTACCGGCAACCC
genomic: GGGGCATGCGCGTGTACGACAGCGTCGCGCGGTCCAACAGCTACCCCGAGgtgggtgggc ... ggaatcgcagATGAACGACCCTCGTGGCTCGGCGGCCTACGATGACGGCTACCGGCAACCC
EST: gi|16437795|gb|BM003015.1|BM003015
EST:     GGGGCATGCGCGTGTACGACAGCGTCGCGCGGTCCAACAGCTACCCCGAG                         ATGAACGACCCTCGTGGCTCGGCGGCCTACGATGA
genomic: GGGGCATGCGCGTGTACGACAGCGTCGCGCGGTCCAACAGCTACCCCGAGgtgggtgggc ... ggaatcgcagATGAACGACCCTCGTGGCTCGGCGGCCTACGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgccagcacttgactaccagtgtacggcaaatactgtgccctggaatcgcagATGAACGACCCTCGTGGCTCGGCGGCCTACGATGACGGCTACCGGCAACCCATTGTTGTG
          acttgac  putative branch site (score: 4)
                               aaatact  TA-rich tract