Sequence
atgc intronic sequence ATGC exonic sequence...aagggaaagtagtgcccagccgaccgcgtggccctgcccaaaccttttgcaccgtgcgcctggcccccgctcctcctctccctcggccgcgcccctgcagATGCGTCCATCTGGCTGTTTCAGTTTATGAAGGCCATGCGCGACGACAAGGGCGACATGATGCGCAACGCGCATCTTCTGGGCTTCTTCCGCCGCATCTG
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP06305 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP06305 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GLYMA01G16370.1 (Glycine max), 3'ss of exon 1
aagggaaagtagtgcccagccgaccgcgtggccctgcccaaaccttttgcaccgtgcgc-ctggcccccgctcctcctctccctcggccgcgcccctgcagATGCGTCCATCTGGCTGTTTCAGTTTATGAAGGCCATGCGCGACGACAAGGGCGACATGATGCGCAACGCGCATCTTCTGGGCTTCTTCCGCCGCATCTG
||| | || | ||| | | || | || | ||| | | || ||| | |||||||| ||| ||| || | |||||| | || || ||||||||||| |||||||| ||| | |||||||| ||| | |||||||||||||| ||||| ||
--------gtactccct--caaaccctaatactttctttctctctctcccatttcataaacaaataaccgactttttcatttttc--tcgcataatttcagATGCGAGCATATGGATGGTACAGTTTGTCAAAGCGATGCGCGACGAGAAGGGCGAAATGGTTCGCAACGCCCATTTGCTGGGCTTCTTCCGTCGCATTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgcaccgtgcgcctggcccccgctcctcctctccctcggccgcgcccctgcagATGCGTCCATCTGGCTGTTTCAGTTTATGAAGGCCATGCGCGACGACAAGGGCGACATGATGCGCAACGCGCATCTTCTGGGCTTCTTCCGCCGCATCTG
ctcctcctctccctcg CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagggaaagtagtgcccagccgaccgcgtggccctgcccaaaccttttgcaccgtgcgcctggcccccgctcctcctctccctcggccgcgcccctgcagATGCGTCCATCTGGCTGTTTCAGTTTATGAAGGCCATGCGCGACGACAAGGGCGACATGATGCGCAACGCGCATCTTCTGGGCTTCTTCCGCCGCATCTG
- - - - - - - - - - - - - - - - - - cccaaac