1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttgtcagctaaagtttctcgtaaatgctacccgtattgcacagcgccatcagccctgtcgataacggcaactgcctgggcgcaacccctttgcttgcagGTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCTCTGGAGCAGGAGTTCCGCTCCATCCTGCAGGAGCGCAACCCCAGCGCTG
species | Chlamydomonas reinhardtii |
transcript | EDP06297 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCAAAGCCCCAGAATGCTATTGGTGCGGCCCTCGTGGCTACCTCCCTG GTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCTEST: gi|10768755|gb|AV619580.1|AV619580
genomic: ACGCAAAGCCCCAGAATGCTATTGGTGCGGCCCTCGTGGCTACCTCCCTGgtgcgtcggg ... ttgcttgcagGTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCT
EST: ACGCAAAGCCCCAGAATGCTATTGGTGCGGCCCTCGTGGCTACCTCCCTG GTGCTGACCACCAGCCCTGCGACTCGCCAACACCTACGAGCAGTCGGTGGCEST: gi|49458792|gb|BP086705.1|BP086705
genomic: ACGCAAAGCCCCAGAATGCTATTGGTGCGGCCCTCGTGGCTACCTCCCTGgtgcgtcggg ... ttgcttgcagGTGCTGACCACCAGCCCTGCG-CTCGCCAACACCTACGAGCAGTCGGTGGC
EST: ACGCAAAGCCCCAGAATGCTATTGGTGCGGCCCTCGTGGCTACCTCCCTG GTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCT
genomic: ACGCAAAGCCCCAGAATGCTATTGGTGCGGCCCTCGTGGCTACCTCCCTGgtgcgtcggg ... ttgcttgcagGTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCT
gccatcagccctgtcgataacggcaactgcctgggcgcaacccctttgcttgcagGTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCTCTGGAGCAGGAGTTCCGCTCCATCCTGCAGGAGCGCAACCCCAGCGCTG
cgataac putative branch site (score: 3)
cccctttgctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcagctaaagtttctcgtaaatgctacccgtattgcacagcgccatcagccctgtcgataacggcaactgcctgggcgcaacccctttgcttgcagGTGCTGACCACCAGCCCTGCGCTCGCCAACACCTACGAGCAGTCGGTGGCTCTGGAGCAGGAGTTCCGCTCCATCCTGCAGGAGCGCAACCCCAGCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - -acccgta
- - - - - - - - - - - - - - - - - - ttgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacccc