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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcggcggcggcgccggagtgtgctgcagcactgtcggaagaattaggggccgcaccatggagccttgcgcgtccgcacatggggatgcagtggaagcggaacgctgcgaactgtcactgtttgcacccttcgttgacttccggtgcccctacctgtgttcacacgtcctcttgcagGACCTACATCGCTCGTATAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06296
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10790270|gb|AV627636.1|AV627636
EST:     ATCTACGTGTATGAGCTGCCACCGGTGGCGAACACCTG                         GACCTACATCGCTCGTATAG
genomic: ATCTACGTGTATGAGCTGCCACCGGTGGCGAACACCTGgtgagcggcg ... cctcttgcagGACCTACATCGCTCGTATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacccttcgttgacttccggtgcccctacctgtgttcacacgtcctcttgcagGACCTACATCGCTCGTATAG
         cgttgac  putative branch site (score: 4)
                                          cgtcctctt  putative PPT