Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaagatgctacaagcgataatgctggtggaggttgtaacggttgccattcagccattccacaagttcacatgcgcgtacgtatgttatcttattgtatggatatgctcctcaacctgcctcactgtccggcacctgcctgccattccgactgacaagcgtcaccgctccgcattgcgtagAGGCCATCCTGTTCAAGGTGACATCTGCTCCTGGCGCCCAACAGTGGCGGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05859
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16429006|gb|BI994232.1|BI994232
EST:     TAACTCCTTCAAAGTCGACTACACGCTGCCCTGCAACGCCACAGATGCAC                         AGGCCATCCTGTTCAAGGTGACATCTGCTCCTGGCGCCCAACAGTGGCGGC
genomic: TAACTCCTTCAAAGTCGACTACACGCTGCCCTGCAACGCCACAGATGCACgtgagtaaga ... cattgcgtagAGGCCATCCTGTTCAAGGTGACATCTGCTCCTGGCGCCCAACAGTGGCGGC
EST: gi|22074294|gb|BQ823385.1|BQ823385
EST:     TAACTCCTTCAAAGTCGACTACACGCTGCCCTGCAACGCCACAGATGCAC                         AGGCCATCCTGTTCAAGGTGACATCTGCTCCTGGCGCCCAACAGTGGCGGC
genomic: TAACTCCTTCAAAGTCGACTACACGCTGCCCTGCAACGCCACAGATGCACgtgagtaaga ... cattgcgtagAGGCCATCCTGTTCAAGGTGACATCTGCTCCTGGCGCCCAACAGTGGCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccggcacctgcctgccattccgactgacaagcgtcaccgctccgcattgcgtagAGGCCATCCTGTTCAAGGTGACATCTGCTCCTGGCGCCCAACAGTGGCGGCAG
                      gactgac  putative branch site (score: 2)