1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGCTGGTGGACGACATTGGTGATGTGACGATCACGAACGACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgccaagcgaaacccgcgcccccgcgcccctcgcagtcaacgcgagctggggcctagagcaggggccagaccgccaatcggggaagactgaga...
species | Chlamydomonas reinhardtii |
transcript | EDP05815 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGNCAAG ATCCTGTTGGAGCTGTCGNAGCTGEST: gi|10126744|gb|BE725448.1|BE725448
genomic: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgc ... tgtacggtagATCCTGGTGGAGCTGGCGGAGCTG
EST: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAG ATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACCEST: gi|49468768|gb|BP096629.1|BP096629
genomic: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgc ... tgtacggtagATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACC
EST: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAG ATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACCEST: gi|15702324|gb|BI726629.1|BI726629
genomic: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgc ... tgtacggtagATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACC
EST: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAG ATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACCEST: gi|15371487|gb|BI530913.1|BI530913
genomic: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgc ... tgtacggtagATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACC
EST: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAG ATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACC
genomic: ACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgc ... tgtacggtagATCCTGGTGGAGCTGGCGGAGCTGCAGGACTCGGAGGTGGGCGACGGCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGGTGGACGACATTGGTGATGTGACGATCACGAACGACGGCGCCACCATTCTGCGGTTGCTGGAGGTGGAGCACCCGGCCGCCAAGgtgcgcgtgccaagcgaaacccgcgcccccgcgcccctcgcagtcaacgcgagctggggcctagagcaggggccagaccgccaatcggggaagactgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA