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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgatggagggcaagtgtagatacttgccccgtcgggcatggtgcttgcgtgtccgctcggatgtttctcgcttgcacctgattccttgccgagttattctgcgttgcgcttgcaattgcagGCCGAGTACCTACGGACACAGCTGACGATGCTGCTGGGGTCGCGGCAGGCGGACAGCGCGCAGGCCGCAGGCACCGTGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05813
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23358577|gb|BU646397.1|BU646397
EST:     TGGCGCCAGCAG                         GCCGAGTACCTACGGACACAGCTGACGATGCTGCTGGGGTCGCGGCAGGCG
genomic: TGGCGCCAGCAGgtgggtgatg ... gcaattgcagGCCGAGTACCTACGGACACAGCTGACGATGCTGCTGGGGTCGCGGCAGGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgcttgcacctgattccttgccgagttattctgcgttgcgcttgcaattgcagGCCGAGTACCTACGGACACAGCTGACGATGCTGCTGGGGTCGCGGCAGGCGGACAGCGCGCAGGCCGCAGGCACCGTGCAG
         acctgat  putative branch site (score: 4)
 agttatt  TA-rich tract