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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgctgaatattcaggggggctttggtccggagcgggaaaggtctcgcatagtgtggccctagctagcgaaggctgcggggctgcaaacccatccttagcacgcgaaggggtcccttcaatgcgccacctgccgaggcgcaacagcgtggcaccgtttgcggctaactacagGGTGCGGAGACTGGGCAAGTTGCGTTCTGGAGCACATCACCTGTGCTGAACGCGGAGTTCTCCAACCTGTATACTGCGGCCAGCGTTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05789
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15370683|gb|BI530109.1|BI530109
EST:     ATGTGCAGGCGACAGTATCATACACACAGGATGCCATCCTCATATTTGAG                         N
genomic: ATGTGCAGGCGACAGTATCATACACACAGGATGCCATCCTCATATTTGAGgtatgcgctg ... ctaactacag-
EST: gi|15370683|gb|BI530109.1|BI530109
EST:     ATGTGCAGGCGACAGTATCATACACACAGGATGCCATCCTCATATTTGAG                         N
genomic: ATGTGCAGGCGACAGTATCATACACACAGGATGCCATCCTCATATTTGAGgtatgcgctg ... ctaactacag-
EST: gi|23365789|gb|BU653609.1|BU653609
EST:     ATGTGCAGGCGACAGTATCATACACACAGGATGCCATCCTCATATTTGAG                         GGTGCGGAGACTGGGCAAGTTGCGTTCTGGAGCACATCACCTGTGCTGAAC
genomic: ATGTGCAGGCGACAGTATCATACACACAGGATGCCATCCTCATATTTGAGgtatgcgctg ... ctaactacagGGTGCGGAGACTGGGCAAGTTGCGTTCTGGAGCACATCACCTGTGCTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgcgccacctgccgaggcgcaacagcgtggcaccgtttgcggctaactacagGGTGCGGAGACTGGGCAAGTTGCGTTCTGGAGCACATCACCTGTGCTGAACGCGGAGTTCTCCAACCTGTATACTGCGGCCAGCGTTCAG
                                           ggctaac  putative branch site (score: 2)