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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcccgttgcagacgtcgtgtatcggtccatgcagaatccttgacaacgcttggccatactgtgtatatgcacgctgacgctccatggtttcttctgtgcttgcgtgtgcttgcacaacttgtagGTGGGCAAGGCGTGGCTGGCCCTGGCGCGTATGTACCAGCATGTGGCGGAGGCGGAGCGCAACAACGGCGTCAACTGCGCCAGCAGCATGACCAAGGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05786
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22050823|gb|BQ809364.1|BQ809364
EST:     CGCATCCCCAG                         GTGGGCAAGGCGTGGCTGGCCCTGGCGCGTATGTACCAGCATGTGGCGGAG
genomic: CGCATCCCCAGgtgcgcccgt ... caacttgtagGTGGGCAAGGCGTGGCTGGCCCTGGCGCGTATGTACCAGCATGTGGCGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgctgacgctccatggtttcttctgtgcttgcgtgtgcttgcacaacttgtagGTGGGCAAGGCGTGGCTGGCCCTGGCGCGTATGTACCAGCATGTGGCGGAGGCGGAGCGCAACAACGGCGTCAACTGCGCCAGCAGCATGACCAAGGCCG
  cgctgac  putative branch site (score: 3)