1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTCGCCGCACGGTGTGCCCATTGACCTGCTGGACCGGCTGCTCATCATTTCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGACATCAGgtgcgcccgcagcccgcgcgccggctgcctgaaatgcgtgctgcttccgctgcttggagaatgatcagcgtggctttggcactgcgttgcaaagtctatg...
species | Chlamydomonas reinhardtii |
transcript | EDP05775 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGACATCAG GTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGACEST: gi|10780641|gb|AV637321.1|AV637321
genomic: TCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGACATCAGgtgcgcccgc ... ccccctgcagGTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGAC
EST: TCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGACATCAG GTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGACEST: gi|23365663|gb|BU653483.1|BU653483
genomic: TCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGACATCAGgtgcgcccgc ... ccccctgcagGTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGAC
EST: GCGAGAAGGAGATCCGCCTCATCCTGGACATCAG GTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGAC
genomic: GCGAGAAGGAGATCCGCCTCATCCTGGACATCAGgtgcgcccgc ... ccccctgcagGTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGCCGCACGGTGTGCCCATTGACCTGCTGGACCGGCTGCTCATCATTTCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGACATCAGgtgcgcccgcagcccgcgcgccggctgcctgaaatgcgtgctgcttccgctgcttggagaatgatcagcgtggctttggcactgcgttgcaaagtctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtctat