1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCTCCTTCTACGAGCATCGGCAGTACAAGATCGTGTATCGGAGATACGCCTCGCTGTTCTTCATGGTCGGGGTGGACGATGACGAGgtgggggaggcaggcgtgtatgtgtgtatgcgctctgcgacgggcatcaggcgagagccgaggccggaggcgttagagcgtgggctgcggcgagcaggga...
species | Chlamydomonas reinhardtii |
transcript | EDP05692 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCGGAGATACGCCTCGCTGTTCTTCATGGTCGGGGTGGACGATGACGAG AACGAGTTGGCCACGCTGGAGTTCATCCACTGCTTEST: gi|16432638|gb|BI997864.1|BI997864
genomic: ATCGGAGATACGCCTCGCTGTTCTTCATGGTCGGGGTGGACGATGACGAGgtgggggagg ... cctctcacagAACGAGTTGGCCACGCTGGAGTTCATCCACTGCTT
EST: ATCGGAGATACGCCTCGCTGTTCTTCATGGTCGGGGTGGACGATGACGAG AACGAGTTGGCCACGCTGGAGTTCATCCACTGCTTTGTGGAGGTGCTGGAC
genomic: ATCGGAGATACGCCTCGCTGTTCTTCATGGTCGGGGTGGACGATGACGAGgtgggggagg ... cctctcacagAACGAGTTGGCCACGCTGGAGTTCATCCACTGCTTTGTGGAGGTGCTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCCTTCTACGAGCATCGGCAGTACAAGATCGTGTATCGGAGATACGCCTCGCTGTTCTTCATGGTCGGGGTGGACGATGACGAGgtgggggaggcaggcgtgtatgtgtgtatgcgctctgcgacgggcatcaggcgagagccgaggccggaggcgttagagcgtgggctgcggcgagcaggga
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcga