1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcgatcgagcctcatgacctgcgtatcccaccctgcctccaaaggactgtttaccctgcctgtgttgcttgttcctcccccaaccgtgaccaaatccagATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTACGTGACGGAGCAGGAGCTGGAGTTCGCGTTTGAGCAACTGGAGCGCCGCC
species | Chlamydomonas reinhardtii |
transcript | EDP05673 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTCCATCCAGGAGGCGCGTGCACGGCTGCGGGAGCAGGACGCGCAG ATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTACEST: gi|15697314|gb|BI721619.1|BI721619
genomic: AGGAGTCCATCCAGGAGGCGCGTGCACGGCTGCGGGAGCAGGACGCGCAGgtgggggctc ... ccaaatccagATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTAC
EST: AGGAGTCCATCCAGGAGGCGCGTGCACGGCTGCGGGAGCAGGACGCGCAG ATCCTGGAGTACTGCCCCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTACEST: gi|15695029|gb|BI719350.1|BI719350
genomic: AGGAGTCCATCCAGGAGGCGCGTGCACGGCTGCGGGAGCAGGACGCGCAGgtgggggctc ... ccaaatccagATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTAC
EST: AGGAGTCCATCCAGGAGGCGCGTGCACGGCTGCGGGAGCAGGACGCGCAG ATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTAC
genomic: AGGAGTCCATCCAGGAGGCGCGTGCACGGCTGCGGGAGCAGGACGCGCAGgtgggggctc ... ccaaatccagATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgatcgagcctcatgacctgcgtatcccaccctgcctccaaaggactgtttaccctgcctgtgttgcttgttcctcccccaaccgtgaccaaatccagATCCTGGAGTACTGCCGCCGCATTGTGGCCCGCTACCGGCGCGGCGAGTACGTGACGGAGCAGGAGCTGGAGTTCGCGTTTGAGCAACTGGAGCGCCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - agcctca
- - - - - - - - - - tgcgtat
- - - - - - - - - - - - - - - - - - - - - - - - tgtttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt