1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGCGCGGCAGAGCTGGGTGTAGGGCTGGCGGGCGGCGAGGTGGCACGACTGCTCGCCTACGCACGCTCCGTGGCGCACTTCCCCACAGCCGTCAAGGAGgtgagtgtgcctgttccaggacgctgatggcaggcgtgagtggggggtcgtggaagggcagcggcggcacgcggcgttaccgaccttgttcatccacgtgccgtttccctgccccccgcccccag
species | Chlamydomonas reinhardtii |
transcript | EDP05665 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGCTCGCCTACGCACGCTCCGTGGCGCACTTCCCCACAGCCGTCAAGGAG TTCCCCTGGCGCAACGGCTGGTTCTACGGCCTGAGCCAGAAGGCCTTGGCGEST: gi|9441885|gb|BE442370.1|BE442370
genomic: TGCTCGCCTACGCACGCTCCGTGGCGCACTTCCCCACAGCCGTCAAGGAGgtgagtgtgc ... ccgcccccagTTCCCCTGGCGCAACGGCTGGTTCTACGGCCTGAGCCAGAAGGCCTTGGCG
EST: AGCCGTCAAGGAG TTCCCCTGGCGCAACGGCTGGTTTTACGGCCTGAGCCAGAAGGCCTTGGCG
genomic: AGCCGTCAAGGAGgtgagtgtgc ... ccgcccccagTTCCCCTGGCGCAACGGCTGGTTCTACGGCCTGAGCCAGAAGGCCTTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCGCGGCAGAGCTGGGTGTAGGGCTGGCGGGCGGCGAGGTGGCACGACTGCTCGCCTACGCACGCTCCGTGGCGCACTTCCCCACAGCCGTCAAGGAGgtgagtgtgcctgttccaggacgctgatggcaggcgtgagtggggggtcgtggaagggcagcggcggcacgcggcgttaccgaccttgttcatccacgtgccgtttccctgccccccgcccccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG