Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtactgtcgagcgactgaaatttgcgcgggtcagcagctggccccggtctgtgcgtgcctgactgtgtatgacattgcaatcttcattgcacagTTCGGCACCGATTTCAAGATGATGGACGCGATGGAGGGGCGCGGGCAGACTACCAAGGGTATTTGGATGTCAAAGTCCCCCAAGGTGGCGGACACCACCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05631
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792206|gb|AV629572.1|AV629572
EST:     CGATTATGGGACCCCAGAGCTCTGGCAAGAGCACGCTGCTCAACTACGTG                         TTCGGCACCGATTTCAAGATGATGGACGCGATGGAGGGGCGCGGGCAGACT
genomic: CGATTATGGGACCCCAGAGCTCTGGCAAGAGCACGCTGCTCAACTACGTGgtgcgtactg ... cattgcacagTTCGGCACCGATTTCAAGATGATGGACGCGATGGAGGGGCGCGGGCAGACT
EST: gi|10783015|gb|AV639687.1|AV639687
EST:     CGATTATGGGACCCCAGAGCTCTGGCAAGAGCACGCTGCTCAACTACGTG                         TTCGGCACCGATTTCAAGATGATGGACGCGATGGAGGGGCGCGGGCAGACT
genomic: CGATTATGGGACCCCAGAGCTCTGGCAAGAGCACGCTGCTCAACTACGTGgtgcgtactg ... cattgcacagTTCGGCACCGATTTCAAGATGATGGACGCGATGGAGGGGCGCGGGCAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccccggtctgtgcgtgcctgactgtgtatgacattgcaatcttcattgcacagTTCGGCACCGATTTCAAGATGATGGACGCGATGGAGGGGCGCGGGCAGACTACCAAGGGTATTTGGATGTCAAAGTCCCCCAAGGTGGCGGACACCACCG
                 gcctgac  putative branch site (score: 3)
                                         tcttcatt  putative PPT