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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTGCGGCGGGCTGCGGCGCGACAAGCAGGACCTGGACAAGGACGCGCGGCGGGCGGAGGCGAACTTCCAGCGCGCGCAGGGTGCCATCCGCAAGCATgtgcgttgatgctgctcgctgcgggctcgcatctgggtcggcagttcggcacacgtgctgcttgtgctgcttacgcaagcaggcgtcgtggtgctcaacgttgaggggctgtttttgtcttaccacggtgtggtttggggggtggcgctgacatcgtgtgccgccttgtcatgttccttccgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05629
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6549935|gb|AV395719.1|AV395719
EST:     GGCGGGCGGAGGCGAACTTCCAGCGCGCGCAGGGTGCCATCCGCAAGCAT                         GACGAGGACATCCACAAGCTGAGCACCGAGCTGACGGGGCTGCAGGAGGAG
genomic: GGCGGGCGGAGGCGAACTTCCAGCGCGCGCAGGGTGCCATCCGCAAGCATgtgcgttgat ... ccttccgtagGACGAGGACATCCACAAGCTGAGCACCGAGCTGACGGGGCTGCAGGAGGAG
EST: gi|10792186|gb|AV629552.1|AV629552
EST:     GGCGGGCGGAGGCGAACTTCCAGCGCGCGCAGGGTGCCATCCGCAAGCAT                         GACGAGGACATCCACAAGCTGAGCACCGAGCTGACGGNGCTGCANGAGGAG
genomic: GGCGGGCGGAGGCGAACTTCCAGCGCGCGCAGGGTGCCATCCGCAAGCATgtgcgttgat ... ccttccgtagGACGAGGACATCCACAAGCTGAGCACCGAGCTGACGGGGCTGCAGGAGGAG