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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggggcgggcgccttgcaatgcaccccagcacgcgatggccccgaggtcaatttcatagttacgcgcttcgcagcggctcgtagccgccgccgctgtgtgtaggcacatgaagcacactctcacccctctgcccctgccttgccttctcccccccatatccgcagAAAATCCTGGTCGACCACGAGGGGCGTCCCATCCGCCTGTTTTACCACAACTGGGACCAGGGGGATGTTGAGGGGGCGATCTATAAAGCGCTTCACGACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05620
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693561|gb|BI717866.1|BI717866
EST:     GCGGCGGCGGCGGCAGCGGAGCCGGCAAGGACCTCATCTGGAACTTCCAG                         AAAATCCTGGTCGACCACGAGGGGCGTCCCATCCGCCTGTTTTACCACAAC
genomic: GCGGCGGCGGCGGCAGCGGAGCCGGCAAGGACCTCATCTGGAACTTCCAGgtgaggggcg ... atatccgcagAAAATCCTGGTCGACCACGAGGGGCGTCCCATCCGCCTGTTTTACCACAAC
EST: gi|22062971|gb|BQ815028.1|BQ815028
EST:     GCGGCGGCGGCGGCAGCGGAGCCGGCAAGGACCTCATCTGGAACTTCCAG                         AAAATCCTGGTCGACCACGAGGGGCGTCCCATCCGCCTGTTTTACCACAAC
genomic: GCGGCGGCGGCGGCAGCGGAGCCGGCAAGGACCTCATCTGGAACTTCCAGgtgaggggcg ... atatccgcagAAAATCCTGGTCGACCACGAGGGGCGTCCCATCCGCCTGTTTTACCACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcacactctcacccctctgcccctgccttgccttctcccccccatatccgcagAAAATCCTGGTCGACCACGAGGGGCGTCCCATCCGCCTGTTTTACCACAACTGGGACCAGGGGGATGTTGAGGGGGCGATCTATAAAGCGCTTCACGACG
       ctctcac  putative branch site (score: 3)
       ctctcacccctctgcc  CT-rich tract