1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggcagctgcattgtggcgcatggagcctacgtgacttgacaagcatcctggtcacgcatgtgtagtaacccgagcgggtgccgtctcctgactgttgcagGTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATGCCGTACAACGTCATCTGCCTCTCCTCCACCGTACTGGCGGTGTACTTCG
species | Chlamydomonas reinhardtii |
transcript | EDP05615 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGTGTCGCCACTGCTGCTGGCGCTGCAGGGCAGTGGCGTGCAGCAG GTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATGEST: gi|49459697|gb|BP087610.1|BP087610
genomic: CGCTGGTGTCGCCACTGCTGCTGGCGCTGCAGGGCAGTGGCGTGCAGCAGgtgtgtgtga ... actgttgcagGTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATG
EST: CGCTGGTGTCGCCACTGCTGCTGGCGCTGCAGGGCAGTGGCGTGCAGCAG GTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATGEST: gi|15700355|gb|BI724660.1|BI724660
genomic: CGCTGGTGTCGCCACTGCTGCTGGCGCTGCAGGGCAGTGGCGTGCAGCAGgtgtgtgtga ... actgttgcagGTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATG
EST: CCCTGGTGTCGCCACTGCTGCTGGCGCTGCAGGGCAGTGGCGTGCAGCAG GTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATG
genomic: CGCTGGTGTCGCCACTGCTGCTGGCGCTGCAGGGCAGTGGCGTGCAGCAGgtgtgtgtga ... actgttgcagGTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcagctgcattgtggcgcatggagcctacgtgacttgacaagcatcctggtcacgcatgtgtagtaacccgagcgggtgccgtctcctgactgttgcagGTCTACACACCCGCGCTGCTGGTGCCACTGGCGGCGCCCGACTTCAGCATGCCGTACAACGTCATCTGCCTCTCCTCCACCGTACTGGCGGTGTACTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - -acgcatg