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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCATTTTTCTGATTGAGCACTTCCTTACCGACGgtgagttttcggcgcccaatggcgcagacagacttgagcagcgccagcctctgctgtgtacataaacacattcctatgaagattagcgcagttagccaactgtgacacgccttagagcgtgttgcagctgttgccccaccctggcttctcacccctcccttggcccctccccccctttcctctccccccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05598
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23360635|gb|BU648455.1|BU648455
EST:     CGCATTTTTCTGATTGAGCACTTCCTTACCGACG                         AGGAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGTCTGGAGCGCTCGG
genomic: CGCATTTTTCTGATTGAGCACTTCCTTACCGACGgtgagttttc ... ccccccacagAGGAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGTCTGGAGCGCTCGG
EST: gi|161795848|gb|FC087338.1|FC087338
EST:     CGCATTTTTCTGATTGAGCACTTCCTTACCGACG                         AGGAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGCCTGGAGCGCTCAG
genomic: CGCATTTTTCTGATTGAGCACTTCCTTACCGACGgtgagttttc ... ccccccacagAGGAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGTCTGGAGCGCTCGG
EST: gi|10775983|gb|AV632663.1|AV632663
EST:     CGCATTTTTCTGATTGAGCACTTCCTTACCGACG                         AGGAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGTCTGGAGCGCTCGG
genomic: CGCATTTTTCTGATTGAGCACTTCCTTACCGACGgtgagttttc ... ccccccacagAGGAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGTCTGGAGCGCTCGG