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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcattcaagcgcgtgtgcggcccaaaacgcgcaaacggcccggggtgaataatctgtgctgatgtgcatatgtgctgttgtttcgcgccgcagCGCTGAGGACACCGTCATTCCCGCCAAGGGCAAGGGCATCGTGAAGACGGGCCTGTCCATCCGCTGCCCCAAGGGCACTTACGGCCGTGTGGCGCCCCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04616
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccggggtgaataatctgtgctgatgtgcatatgtgctgttgtttcgcgccgcagCGCTGAGGACACCGTCATTCCCGCCAAGGGCAAGGGCATCGTGAAGACGGGCCTGTCCATCCGCTGCCCCAAGGGCACTTACGGCCGTGTGGCGCCCCGC
                  tgctgat  putative branch site (score: 3)
                                       ttgtttc  putative PPT
       tgaataat  TA-rich tract