1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttagtttgttctggtactcacaacccccaccccctgcttgtatactgttcccaatgtttcttaaacttgcaaccccaccgcccacccccaccccaccagGAGGGCTCCATCCTGCTTGACGGCCGCCCCATCTCCAGCTTCAGCCGCGGCGAGTGGGCCAAGGCCGTGAGCCTGGTCAGCCAGGACCCGGTGCTCTTCA
species | Chlamydomonas reinhardtii |
transcript | EDP04614 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ctgttcccaatgtttcttaaacttgcaaccccaccgcccacccccaccccaccagGAGGGCTCCATCCTGCTTGACGGCCGCCCCATCTCCAGCTTCAGCCGCGGCGAGTGGGCCAAGGCCGTGAGCCTGGTCAGCCAGGACCCGGTGCTCTTCA
cccacccccacccc CT-rich tract
tttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttgttctggtactcacaacccccaccccctgcttgtatactgttcccaatgtttcttaaacttgcaaccccaccgcccacccccaccccaccagGAGGGCTCCATCCTGCTTGACGGCCGCCCCATCTCCAGCTTCAGCCGCGGCGAGTGGGCCAAGGCCGTGAGCCTGGTCAGCCAGGACCCGGTGCTCTTCA
-ttagttt
- - - - - - - - actcaca
- - - - - - - - - - - -accccca
- - - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccca