Sequence
atgc intronic sequence ATGC exonic sequencegtgcgtcaaatttcgacagggcagggcgcgcatggaaggggctctgctcaacccctcgatgctaacctgtctccgttacctcctacctgcagAGCGAGAACGAGGAGGACGTGAAGGACACGGAGGAGCTCACGGCAGCGAAGGAGATGCTGGCGGAAATTGAGAAGTTGTTCAAGTGACATGCCGACCCGC
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP04608 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14239653|gb|BG858469.1|BG858469EST: AAACACGACAGCGGTTGGAGGCAGCGGTGGCGGAGCTGCAGTCTTTCGTG AGCGAGAACGAGGAGGACGTGAAGGACACGGAGGAGCTCACGGCAGCGAAG
genomic: AAACACGACAGCGGTTGGAGGCAGCGGTGGCGGAGCTGCAGTCTTTCGTGgtgcgtcaaa ... ctacctgcagAGCGAGAACGAGGAGGACGTGAAGGACACGGAGGAGCTCACGGCAGCGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggggctctgctcaacccctcgatgctaacctgtctccgttacctcctacctgcagAGCGAGAACGAGGAGGACGTGAAGGACACGGAGGAGCTCACGGCAGCGAAGGAGATGCTGGCGGAAATTGAGAAGTTGTTCAAGTGACATGCCGACCCGC
tgctaac putative branch site (score: 1)
tctccgttacctcct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgtcaaatttcgacagggcagggcgcgcatggaaggggctctgctcaacccctcgatgctaacctgtctccgttacctcctacctgcagAGCGAGAACGAGGAGGACGTGAAGGACACGGAGGAGCTCACGGCAGCGAAGGAGATGCTGGCGGAAATTGAGAAGTTGTTCAAGTGACATGCCGACCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT