1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTCGCCGGCGACAGCTTCCCACGGGCGGTGTTCCCGTGCCTCGTGGGGAGACCCAGCTTCAAGTACAATGACCCCTTCTCCCAGCACCAGCAACTGAAGgtttgtccgtgggggctgcaaccaccacccggctttctcaggagccctgtccagagccgtgggggcagtggggcagccccttcgccccaccgtgccaggc...
species | Chlamydomonas reinhardtii |
transcript | EDP04596 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACCCAGCTTCAAGTACAATGACCCCTTCTCCCAGCACCAGCAACTGAAG GACATCTACGTGGGCTCCGAGGCCTCCGGCAACAAGGACCAGCTGGAGCTGEST: gi|15701160|gb|BI725465.1|BI725465
genomic: GACCCAGCTTCAAGTACAATGACCCCTTCTCCCAGCACCAGCAACTGAAGgtttgtccgt ... ccgcccacagGACATCTACGTGGGCTCCGAGGCCTCCGGCAACAAGGACCAGCTGGAGCTG
EST: GACCCAGCTTCAAGTACAATGACCCCTTCTCCCAGCACCAGCAACTGAAG GACATCTACGTGGGCTCCGAGGCCTCCGGCAACAAGGACCAGCTGGAGCTG
genomic: GACCCAGCTTCAAGTACAATGACCCCTTCTCCCAGCACCAGCAACTGAAGgtttgtccgt ... ccgcccacagGACATCTACGTGGGCTCCGAGGCCTCCGGCAACAAGGACCAGCTGGAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGCCGGCGACAGCTTCCCACGGGCGGTGTTCCCGTGCCTCGTGGGGAGACCCAGCTTCAAGTACAATGACCCCTTCTCCCAGCACCAGCAACTGAAGgtttgtccgtgggggctgcaaccaccacccggctttctcaggagccctgtccagagccgtgggggcagtggggcagccccttcgccccaccgtgccaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc