1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acaataacgccttctccatctagccagccatgagtctggacgctccctcccctccctaagtactcattaatgtaaccccgatgtaaccccgctggtgcagGCGACCGGGGCGCGCTGTGGGCGGCGCTGCGCAAGGGCGTGGTGGACAAGCTGACGGGCGGCGGCAGTCAGGGAGGCAGCGGCCAGGAGGACGAGGAGCC
species | Chlamydomonas reinhardtii |
transcript | EDP04587 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
cctcccctccctaagtactcattaatgtaaccccgatgtaaccccgctggtgcagGCGACCGGGGCGCGCTGTGGGCGGCGCTGCGCAAGGGCGTGGTGGACAAGCTGACGGGCGGCGGCAGTCAGGGAGGCAGCGGCCAGGAGGACGAGGAGCC
atgtaac putative branch site (score: 3)
ccccgct CT-rich tract
attaatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaataacgccttctccatctagccagccatgagtctggacgctccctcccctccctaagtactcattaatgtaaccccgatgtaaccccgctggtgcagGCGACCGGGGCGCGCTGTGGGCGGCGCTGCGCAAGGGCGTGGTGGACAAGCTGACGGGCGGCGGCAGTCAGGGAGGCAGCGGCCAGGAGGACGAGGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
acaataa
- - - - - - - - - - - - cagccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaatgt