1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ccaccgccaccaccactaccgccaccactactactaccaccaccaccaacaccaccaacaccaccaccactcacgccaaccacctgccgcccacaaacagGCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCCTGGATGAGAGCGCGCCGGGCGCGGCGCCGCCCTTCGCAGCGCTGCGCTA
species | Chlamydomonas reinhardtii |
transcript | EDP04582 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: GGTGCAGGAACGCCGCAAGTTCGGGCCGCTGGGCTGGAACATCCCGTACG GCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCCEST: gi|16432381|gb|BI997607.1|BI997607
genomic: GGTGCAGGAACGCCGCAAGTTCGGGCCGCTGGGCTGGAACATCCCGTACGgtgagcgaag ... ccacaaacagGCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCC
EST: GGTGCAGGAACGCCGCAAGTTCGGGCCGCTGGGCTGGAACATCCCGTACG GCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCC
genomic: GGTGCAGGAACGCCGCAAGTTCGGGCCGCTGGGCTGGAACATCCCGTACGgtgagcgaag ... ccacaaacagGCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCC
ccaacaccaccaacaccaccaccactcacgccaaccacctgccgcccacaaacagGCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCCTGGATGAGAGCGCGCCGGGCGCGGCGCCGCCCTTCGCAGCGCTGCGCTA
cactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaccgccaccaccactaccgccaccactactactaccaccaccaccaacaccaccaacaccaccaccactcacgccaaccacctgccgcccacaaacagGCTTCGACGACGGCGACCAGCGCATCAGCGTGCGGCAGCTCAAGATGTTCCTGGATGAGAGCGCGCCGGGCGCGGCGCCGCCCTTCGCAGCGCTGCGCTA
- - - ccaccac
- - - - accacca
- - - - - - - - - - - - - - - - - - - - - - accaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccac