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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgcagtcaccgtaacacaagtcagaggcacccccggccggcgtaccgcgggggccgagtcactattagattgtcttatgctgatatgcctcactccgtgcgtttgtatgtatgcgcctaccgtatgtccggctttggctctgataatttgtcgtccgcccttaagcacgcgggtccccaccccaacccgtccagGTGCTTACCAAGTATTGTGTGTTCGGGCAAATGGACATGGCCACAATCAACAAGGGCGCAGTGGTGCAGGTGCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04576
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23367417|gb|BU655235.1|BU655235
EST:     TTGGCCGGTACCTGGCGTCCAACCCCGACCAGCGGCCGCCCAAGACGCAG                         GTGCTTACCAAGTATTGTGTGTTCGGGCA
genomic: TTGGCCGGTACCTGGCGTCCAACCCCGACCAGCGGCCGCCCAAGACGCAGgtcagtgcag ... acccgtccagGTGCTTACCAAGTATTGTGTGTTCGGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgataatttgtcgtccgcccttaagcacgcgggtccccaccccaacccgtccagGTGCTTACCAAGTATTGTGTGTTCGGGCAAATGGACATGGCCACAATCAACAAGGGCGCAGTGGTGCAGGTGCGC
 ctctgat  putative branch site (score: 4)
                                              cccgtcc  putative PPT
     aatttgt  TA-rich tract