1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cggttgacgccctgtccttggccgcgtgaagcacgcattgcaccctgacaccgcgccgcaccgtgcggcacccacccgcccccgtcccccccccgtgcagGCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCGTGCCCATTGGCACCTTGCTGCGGCTGACCGGCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04563 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTGCGGCTGGCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGG GCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCGEST: gi|10781400|gb|AV638080.1|AV638080
genomic: GCTGCGGCTGGCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGGgtaggacagg ... ccccgtgcagGCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCG
EST: GCTGCGGCTGGCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGG GCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCGEST: gi|6543586|gb|AV389370.1|AV389370
genomic: GCTGCGGCTGGCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGGgtaggacagg ... ccccgtgcagGCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCG
EST: GCTGCGGCTGGCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGG GCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCG
genomic: GCTGCGGCTGGCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGGgtaggacagg ... ccccgtgcagGCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCG
tgacaccgcgccgcaccgtgcggcacccacccgcccccgtcccccccccgtgcagGCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCGTGCCCATTGGCACCTTGCTGCGGCTGACCGGCCAG
ccctgac putative branch site (score: 3)
cccacccgcccccgtc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggttgacgccctgtccttggccgcgtgaagcacgcattgcaccctgacaccgcgccgcaccgtgcggcacccacccgcccccgtcccccccccgtgcagGCGAGTACTGCGACCCCCTGTCCATGGACGACGTGGCGTTCCTGCTGCCCGTGCCCATTGGCACCTTGCTGCGGCTGACCGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - gcacgca
- - - - - - - - - - - - - - - - - - - tgcaccc
- - - - - - - - - - - - - - - - - - - - - - - -acaccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaccca