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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCGCTGCGGGGAAGTCAAGCCCAGTGGCTTCGTGGACTCGCCATCGTGCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacctggcccctcgggatatggaggagctgcgtaagcagagcaaaggctgtaatagttgtgtaattctgggtgttgactcggaccggcggtcggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04558
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437915|gb|BM003135.1|BM003135
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|15704494|gb|BI728799.1|BI728799
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|14237622|gb|BG856438.1|BG856438
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|10780268|gb|AV636948.1|AV636948
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|22051927|gb|BQ809970.1|BQ809970
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|8932950|gb|BE227711.1|BE227711
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|161807569|gb|FC094613.1|FC094613
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTCTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|16437023|gb|BM002243.1|BM002243
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|15697932|gb|BI722237.1|BI722237
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
EST: gi|22061768|gb|BQ814446.1|BQ814446
EST:     GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAA                         GTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG
genomic: GCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacct ... gcacctgcagGTCGAAGCTTGCTGAGTGCTCGGGCTTTGCTCCAAAGCAATGGGTCTGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTCGCTGCGGGGAAGTCAAGCCCAGTGGCTTCGTGGACTCGCCATCGTGCTCGTGTCGCTAGCTCTTGCCGGCGCGCCTGCGCCTGCCAGCGCAGCAAgtgagtacctggcccctcgggatatggaggagctgcgtaagcagagcaaaggctgtaatagttgtgtaattctgggtgttgactcggaccggcggtcggc

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