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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCGCACCCGCGTCGCCGGTGTCGGCCCCCCTGCTGGCGACTTCACCTGGCTCGGTGTGCGCTGAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAGgtgcggagggttttgtggacatgcgccttgggaatactttgacactagtttttgggtgcgtgttgggccgcgcaggtgcgttgcagcctcattgcgttgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04548
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10787896|gb|AV644568.1|AV644568
EST:     GTGCGCTGAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAG                         CTTCATCTCTTCCTTCCTTGGCGCTGGCGGCAACGACCTGCCATCCAGCTC
genomic: GTGCGCTGAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAGgtgcggaggg ... ccttgtgtagCTTCATCTCTTCCTTCCTTGGCGCTGGCGGCAACGACCTGCCATCCAGCTC
EST: gi|10793361|gb|AV630727.1|AV630727
EST:     GGCTCGGTGTGCGCTGAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAG                         CTTCATCTCTTCCTTCCTTGGCGCTGGCGGCAACGACCTGCCATCCAGCTC
genomic: GGCTCGGTGTGCGCTGAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAGgtgcggaggg ... ccttgtgtagCTTCATCTCTTCCTTCCTTGGCGCTGGCGGCAACGACCTGCCATCCAGCTC
EST: gi|23367535|gb|BU655353.1|BU655353
EST:     GAGG-CGCGCCTGAGGAGGATGATGCATTTGCAAG                         CTTCATCTCTTCCTTCCTTGGCGCTGGCGGCAACGACCTGCCATCCAGCTC
genomic: GAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAGgtgcggaggg ... ccttgtgtagCTTCATCTCTTCCTTCCTTGGCGCTGGCGGCAACGACCTGCCATCCAGCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGCGCACCCGCGTCGCCGGTGTCGGCCCCCCTGCTGGCGACTTCACCTGGCTCGGTGTGCGCTGAGGCCGCGCCTGAGGAGGATGATGCATTTGCAAGgtgcggagggttttgtggacatgcgccttgggaatactttgacactagtttttgggtgcgtgttgggccgcgcaggtgcgttgcagcctcattgcgttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgcgt