1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgacccggcttgcatccaaacttccgcacccgtacccgttggacctccataccgcgcccgcattcctgacaacggccgcccgcccccgccgcccctgaagGCCTTCACTGACGACAATCTGACGCATGAGGGCGAGGTTTCCATGATCAAGGCGGCGCTGCGCATATCACACCTGCTGCAGCAGCACGACATCGCCTCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04542 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGCTCGTCCGGCATGGAATTGCGGTCAACAACGTGAACAAG GCCTTCACTGACGACAATCTGACGCATGAGGGCGAGGTTTCCATGATCAAGEST: gi|9210675|gb|BE337590.1|BE337590
genomic: CTGTTGCTCGTCCGGCATGGAATTGCGGTCAACAACGTGAACAAGgtaggtccac ... gcccctgaagGCCTTCACTGACGACAATCTGACGCATGAGGGCGAGGTTTCCATGATCAAG
EST: GCCTGCTGTTGCTCGTCCGGCATGGAATTGCGGTCAACAACGTGAACAAG GCCTTCACTGACGACAATCTGACGCATG
genomic: GCCTGCTGTTGCTCGTCCGGCATGGAATTGCGGTCAACAACGTGAACAAGgtaggtccac ... gcccctgaagGCCTTCACTGACGACAATCTGACGCATG
tccataccgcgcccgcattcctgacaacggccgcccgcccccgccgcccctgaagGCCTTCACTGACGACAATCTGACGCATGAGGGCGAGGTTTCCATGATCAAGGCGGCGCTGCGCATATCACACCTGCTGCAGCAGCACGACATCGCCTCAG
tcctgac putative branch site (score: 2)
cccccgccgcccct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacccggcttgcatccaaacttccgcacccgtacccgttggacctccataccgcgcccgcattcctgacaacggccgcccgcccccgccgcccctgaagGCCTTCACTGACGACAATCTGACGCATGAGGGCGAGGTTTCCATGATCAAGGCGGCGCTGCGCATATCACACCTGCTGCAGCAGCACGACATCGCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - -atccaaa
- - - - - - - - - - - - - -acccgta
- - - - - - - - - - - - - - - - - - - - - - -tccatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacaa