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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcggctgcatcgcgcagggaaatgctgctcggtgttgtgagcagccttgtgctagctgtgccttgtcctgcgccagcatgtggtcacatggcattgcgcacaaatttggtgcgctcacagctttgccactgctaaatccgtcccatgcagGTCACATAACACTAACGTCGCGGCGTCCATAGCGGCGCGGCTGCCGTCGCCCGTGGCCGCCGCGCTTCCACCGCTGGGCGGCGCCACGGGCGGCGCCGGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04537
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcacaaatttggtgcgctcacagctttgccactgctaaatccgtcccatgcagGTCACATAACACTAACGTCGCGGCGTCCATAGCGGCGCGGCTGCCGTCGCCCGTGGCCGCCGCGCTTCCACCGCTGGGCGGCGCCACGGGCGGCGCCGGA
                                  tgctaaa  putative branch site (score: 2)
                                         tccgtccc  CT-rich tract
      aaattt  TA-rich tract