Sequence
atgc intronic sequence ATGC exonic sequenceGCCGGCGCCCGCGGCTGCTGCTGCTGGTGCCCGTGCTGGGCTACGGCCCCGCCTGGGCCTCTCATGCACTGGTGGAGCGCAACCGGCCCGCAACGTTCAAgtgggttgggcggtgtgtaaggcgtgtgagatctgggtgaaattagttgcgcctggcatctgtcatgctcgagtgcttcgtgcctctggatggggtcaac...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP04515 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10769011|gb|AV619836.1|AV619836EST: GCCTGGGCCTCTCATGCACTGGTGGAGCGCAACCGGCCCGCAACGTTCAA CTATCCGCTGTGGTCGCTACTGGCTGACCTCCGGATGTTTGTCAGCGTGCT
genomic: GCCTGGGCCTCTCATGCACTGGTGGAGCGCAACCGGCCCGCAACGTTCAAgtgggttggg ... tgccgcgcagCTATCCGCTGTGGTCGCTACTGGCTGACCTCCGGATGTTTGTCAGCGTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGGCGCCCGCGGCTGCTGCTGCTGGTGCCCGTGCTGGGCTACGGCCCCGCCTGGGCCTCTCATGCACTGGTGGAGCGCAACCGGCCCGCAACGTTCAAgtgggttgggcggtgtgtaaggcgtgtgagatctgggtgaaattagttgcgcctggcatctgtcatgctcgagtgcttcgtgcctctggatggggtcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggat