1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cagcctggctgccggactgaagccgtcagtcaacgtggtctctgctgtcgccctgtgtccgtttcgccctgctgtcgcattgttgacaccgcttgtgcagACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04512 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACCGCCCGCCCTTCCTGCGGNCGCAGGGGCCCATCTACCAGACCATCG ACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACCEST: gi|15368374|gb|BI527800.1|BI527800
genomic: AAACCGCCCGCCCTTCCTGCGGCCGCAGGGGCCCATCTACCAGACCATCGgtgggtctgg ... gcttgtgcagACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACC
EST: AAACCGCCCGCCCTTCCTGCGGCCGCAGGGGCCCATCTACCAGACCATCG ACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACC
genomic: AAACCGCCCGCCCTTCCTGCGGCCGCAGGGGCCCATCTACCAGACCATCGgtgggtctgg ... gcttgtgcagACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACC
tgtcgccctgtgtccgtttcgccctgctgtcgcattgttgacaccgcttgtgcagACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACCAG
tgttgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcctggctgccggactgaagccgtcagtcaacgtggtctctgctgtcgccctgtgtccgtttcgccctgctgtcgcattgttgacaccgcttgtgcagACGCTGAGCGGCTCAAGGCGCGCAACAACGAGAGCTTCCCCTTCTATAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - -tcagtca
- - - - - - - - - - - - - - - - - - - - - - - - - -cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgacac