Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtggcacgcgggcgggaacacgcgggtgggttctggggcgcgggctcgcagtattctgccctgctccactatgcttgtgcaggtcgcaaccaacgcgcatgcacgtgtacgtgatgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04502
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694235|gb|BI718540.1|BI718540
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|10125698|gb|BE724402.1|BE724402
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|23359386|gb|BU647206.1|BU647206
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|49466595|gb|BP094508.1|BP094508
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCA
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCA
EST: gi|15373397|gb|BI532823.1|BI532823
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACG
EST: gi|9460606|gb|BE453320.1|BE453320
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|9459690|gb|BE452860.1|BE452860
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|10790988|gb|AV628354.1|AV628354
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|23363902|gb|BU651722.1|BU651722
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|10776455|gb|AV633135.1|AV633135
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|8513804|gb|BE121699.1|BE121699
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|23364965|gb|BU652785.1|BU652785
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
EST: gi|10126176|gb|BE724880.1|BE724880
EST:     CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAA                         GTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG
genomic: CAAGGCCACGGAGGGCGTGTACCACTGTATCGTGGGCAAAAGCTTCGCAAgtaagtgtgg ... tgctgtgcagGTGCTGTGAGCCACGAAACGCGGCAATTCATCCACATGAAG