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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgccccggttttccccaatggcggagccatagcgcacctgtgctttctgtgctggcagaaagcgtttgtcgcggtctttcaccggctctaactcttgcaatgtgcacacaaacacgacagCTACACGGTTCTGGAGCGGAGCGCGGACACTGGAGGGGCGTACTGGACGGTCGAAATTCGCGTCGAGGCCACAGCGAAGGGCTTTTTCCCGCTATGGCCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04468
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22060423|gb|BQ813791.1|BQ813791
EST:     CAAACCAAGCTTGAGACCGTCTGGGACTCGCCGGACCATACTGGCACAAG                         CTACACGGTTCTGGAGCGGAGCGCGGACACTGGAGGGGCGTACTGGACGGT
genomic: CAAACCAAGCTTGAGACCGTCTGGGACTCGCCGGACCATACTGGCACAAGgtgcgccccg ... aacacgacagCTACACGGTTCTGGAGCGGAGCGCGGACACTGGAGGGGCGTACTGGACGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcgcggtctttcaccggctctaactcttgcaatgtgcacacaaacacgacagCTACACGGTTCTGGAGCGGAGCGCGGACACTGGAGGGGCGTACTGGACGGTCGAAATTCGCGTCGAGGCCACAGCGAAGGGCTTTTTCCCGCTATGGCCC
                    ctctaac  putative branch site (score: 2)