1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acatgttcacggccacatgcatccacccctccttcccgctagtttggcttgctttgctttagtttggtctgctactcacgatccacctccccccctgcagTTCCCCAAGGAGCACTACGACTGCCGGCGTGCCGAGCTGTCCACGCTGGACAAGGACGGCGTGGTGGCGCTGCTGCGCCGCCGCTCCACCGCGGCCGTGG
species | Chlamydomonas reinhardtii |
transcript | EDP04466 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
ggcttgctttgctttagtttggtctgctactcacgatccacctccccccctgcagTTCCCCAAGGAGCACTACGACTGCCGGCGTGCCGAGCTGTCCACGCTGGACAAGGACGGCGTGGTGGCGCTGCTGCGCCGCCGCTCCACCGCGGCCGTGG
tactcac putative branch site (score: 1)
tccacctccccccctg putative PPT
tttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgttcacggccacatgcatccacccctccttcccgctagtttggcttgctttgctttagtttggtctgctactcacgatccacctccccccctgcagTTCCCCAAGGAGCACTACGACTGCCGGCGTGCCGAGCTGTCCACGCTGGACAAGGACGGCGTGGTGGCGCTGCTGCGCCGCCGCTCCACCGCGGCCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - -tagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatccac