1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caccagagagctgcactgttggagggccgcgactctttgtcccccaacatttccaaacaacccccgccgacctctgccacccttgcctgtcgtcccccagGGCTTCTGCACGCTGGTGACATACTGGCTGTGCAAGCGGCACTACCGGCTGTTCCGCGGCCGATTTACGTTTGGCCTTCTCGTGGGGCTGCTGGTGGGCC
species | Chlamydomonas reinhardtii |
transcript | EDP04456 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAGGATCTGTGGTTTGGCTTAGATAAACTGGAGCACTGGCTGGCCTGC GGCTTCTGCACGCTGGTGACATACTGGCTGTGCAAGCGGCACTACCGGCTG
genomic: ACCAGGATCTGTGGTTTGGCTTAGATAAACTGGAGCACTGGCTGGCCTGCgtgagtcgct ... cgtcccccagGGCTTCTGCACGCTGGTGACATACTGGCTGTGCAAGCGGCACTACCGGCTG
aacatttccaaacaacccccgccgacctctgccacccttgcctgtcgtcccccagGGCTTCTGCACGCTGGTGACATACTGGCTGTGCAAGCGGCACTACCGGCTGTTCCGCGGCCGATTTACGTTTGGCCTTCTCGTGGGGCTGCTGGTGGGCC
tcgtccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccagagagctgcactgttggagggccgcgactctttgtcccccaacatttccaaacaacccccgccgacctctgccacccttgcctgtcgtcccccagGGCTTCTGCACGCTGGTGACATACTGGCTGTGCAAGCGGCACTACCGGCTGTTCCGCGGCCGATTTACGTTTGGCCTTCTCGTGGGGCTGCTGGTGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- ccagaga
- - - - - - - - - - - - - - - - -tctttgt
- - - - - - - - - - - - - - - - - - - - - -ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaac