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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaggcggtagtgggtaccgtataagaggtttgtcccgcttcgagagagtgggttttggctcatgcagtccatacgtggagacactacaactcactcgctcaatcctcgtttgttcccttccggccagGTTCGGAGGCCAAGGGCGTGCAATGGCGCAAGTTCGGTCTGCTGATGTACTACTACTGGCACCGCAACTTTGGCACCGCCATGAGCTGGTTCGTGTGGGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04438
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785633|gb|AV642305.1|AV642305
EST:     CGAGTCGGCTGTGTGGACCAAGAAGCGCGAGGCCCTTCAGGCCATGGGCG                         GTTCGGAGGCCAAGGGCGTGCAGTGGCGCAAGTTCGGTCTGCTGATGTACT
genomic: CGAGTCGGCTGTGTGGACCAAGAAGCGTGAGGCCCTTCAGGCCATGGGCGgtaagtgagg ... ttccggccagGTTCGGAGGCCAAGGGCGTGCAATGGCGCAAGTTCGGTCTGCTGATGTACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtggagacactacaactcactcgctcaatcctcgtttgttcccttccggccagGTTCGGAGGCCAAGGGCGTGCAATGGCGCAAGTTCGGTCTGCTGATGTACTACTACTGGCACCGCAACTTTGGCACCGCCATGAGCTGGTTCGTGTGGGA
               aactcac  putative branch site (score: 2)
                              tcctcgtttgttccct  putative PPT