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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccccagactcaggcccagtttcgggatgcatgctgaccagcatcttcaattcacacattcttgaagcgtgtgtgaccgcgcgcctctttgcccttgcagTTTGTTCTGTTCCTCATCTGCGCCGTGCACTACGACCAGCTGCGTACTCCCAAGTACATCCACACGTTCCAGTTCCTGTACTACTTCTCCAGTTTCTGGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04437
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785633|gb|AV642305.1|AV642305
EST:     AGCCGTGGATGGGCCGCATGCGCATGCAGGTCATGGGCTTCGCATGGATG                         TTTGTTCTGTTCCTCATCTGCGCCGTGCACTACGATCAGCTGCGCACTCCC
genomic: AGCCGTGGATGGGCCGCATGCGCATGCAGGTCATGGGCTTCGCATGGATGgtgagtcgcg ... gcccttgcagTTTGTTCTGTTCCTCATCTGCGCCGTGCACTACGACCAGCTGCGTACTCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaattcacacattcttgaagcgtgtgtgaccgcgcgcctctttgcccttgcagTTTGTTCTGTTCCTCATCTGCGCCGTGCACTACGACCAGCTGCGTACTCCCAAGTACATCCACACGTTCCAGTTCCTGTACTACTTCTCCAGTTTCTGGG
                                    cgcctctttgccctt  CT-rich tract