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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGGCTCCGTTGGCCGCGCTCTTGCCCGGAAATGAGCGAGGTCATGGAGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcggcagaattgcgccggagaggcatggaggagcgagctttgcgccccagctgcaacgcgctccagcaattggaatgtgtggaagcgcgctgct...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04421
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9028068|gb|BE238108.1|BE238108
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|10790212|gb|AV627578.1|AV627578
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|6547780|gb|AV393564.1|AV393564
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|15702940|gb|BI727245.1|BI727245
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|16435538|gb|BM000758.1|BM000758
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|16431153|gb|BI996379.1|BI996379
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|10768504|gb|AV619329.1|AV619329
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|23359198|gb|BU647018.1|BU647018
EST:     GGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: GGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|15692647|gb|BI716952.1|BI716952
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
EST: gi|10792034|gb|AV629400.1|AV629400
EST:     AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACG                         AATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG
genomic: AGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcgg ... cgtgttgcagAATGTCACTGAGTCAATGCGTCAGGAGCTGAATACAGCAATGGGCACGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGGGGCTCCGTTGGCCGCGCTCTTGCCCGGAAATGAGCGAGGTCATGGAGATGCATTCCCGGGGCGCCAGGACTGCTGGGCGAGCGGCTATGGCGACGgtgagcgcggcagaattgcgccggagaggcatggaggagcgagctttgcgccccagctgcaacgcgctccagcaattggaatgtgtggaagcgcgctgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg