1 5' 3' | 2 5' 3' | 3 5' 3' |
...gccagtcgtagtgcgcagagagttacttcaaacctgcatgttaccgttttgcgtgaccaaccctgctaagtctgcgtgcgttgttgtcatgtgtgtgcagGGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGGTACGGTCCGGCGGAGCAGGAGTGGCAGCCTCTGGAGCAGCGCATCAACC
species | Chlamydomonas reinhardtii |
transcript | EDP04420 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGAAGAAGTCCGACATTGTGGGCTTCAAGGGCGTGCTGTGCGTGCAG GGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGGEST: gi|8400905|gb|BE056539.1|BE056539
genomic: CGGAGAAGAAGTCCGACATTGTGGGCTTCAAGGGCGTGCTGTGCGTGCAGgtgcgctggc ... gtgtgtgcagGGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGG
EST: CGGAGAAGAAGTCCGACATTGTGGGCTTCAAGGGCGTGCTGTGCGTGCAG GGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGGEST: gi|16071652|gb|BI873648.1|BI873648
genomic: CGGAGAAGAAGTCCGACATTGTGGGCTTCAAGGGCGTGCTGTGCGTGCAGgtgcgctggc ... gtgtgtgcagGGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGG
EST: CGGAGAAGAAGTCCGACATTGTGGGCTTCAAGGGCGTGCTGTGCGTGCAG GGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGG
genomic: CGGAGAAGAAGTCCGACATTGTGGGCTTCAAGGGCGTGCTGTGCGTGCAGgtgcgctggc ... gtgtgtgcagGGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagtcgtagtgcgcagagagttacttcaaacctgcatgttaccgttttgcgtgaccaaccctgctaagtctgcgtgcgttgttgtcatgtgtgtgcagGGTTGCGGCAACACGAAGTTCGTCGTCCGCGGTTCTCGGGAAGGCCTAGGGTACGGTCCGGCGGAGCAGGAGTGGCAGCCTCTGGAGCAGCGCATCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - gcagaga
- - - - - - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -accaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgt