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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgcacgttgacgatgatttttgcgagaagggtgatgtggccgcatggcatccccggcacacgcatgcaaccaagacaccgccggtttgtcgctgtctttgcacaggcagGCGGGCGGGCAAGTCCGGAGCAGGAACTACTCGTTCCTGTCCAGCGATGCGGGGCAGCAGGCGACGCAGGTTGATTGGGCCGCAACCTTCAATGACACGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04418
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16071926|gb|BI873922.1|BI873922
EST:     GGCCTGAGTCCCCCTTCCATGCTCTTCAACTGACCGATGCTGAGCGCAAT                         GCAGGCGGGCGGGCAAGTCCGGAGCAGGAACTACTCGTTCCTGTCCAGCGA
genomic: GGCCTGAGTCCCCCTTCCATGCTCTTCAACTGACCGATGCTGAGCGCAATgtgagtgtgc ... gcacaggcagGC-GG-G--CGGGCAAGTCCGGAGCAGGAACTACTCGTTCCTGTCCAGCGA
EST: gi|6547114|gb|AV392898.1|AV392898
EST:     GGCCTGAGTCCCCCTTCCATGCTCTTCAACTGACCGATGCTGAGCGCAAT                         GCAGGCGGGCGGGCAAGTCCGGAGCAGGAACTACTCGTTCCTGTCCAGCGA
genomic: GGCCTGAGTCCCCCTTCCATGCTCTTCAACTGACCGATGCTGAGCGCAATgtgagtgtgc ... gcacaggcagGC-GG-G--CGGGCAAGTCCGGAGCAGGAACTACTCGTTCCTGTCCAGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacacgcatgcaaccaagacaccgccggtttgtcgctgtctttgcacaggcagGCGGGCGGGCAAGTCCGGAGCAGGAACTACTCGTTCCTGTCCAGCGATGCGGGGCAGCAGGCGACGCAGGTTGATTGGGCCGCAACCTTCAATGACACGA
                                        tctttgc  CT-rich tract