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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcttgggcggctgcaggagcgcgtggcagggcgtgcgtggcagggcaagcgctgcggcttgatgttgtgcgaccgcaacacaccgacgcggcgtcgcagtgtgggcgccgcatcgcggctgacgaccttaccgggccttggctttaccttccctgtccgtcgctgtcgcagGGCGACGCCGAGCGCTCGCTGGAGCGGCTGCACGAGGCGGCGGAGAAGGACCTGGGCGCGCACGTGACCAAGGCGCGCAACCAGGCAGACGGCGGCTTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04392
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22057879|gb|BQ812768.1|BQ812768
EST:     ACCGGAACAGCGAGGTGGCGCGGCACAAGGGCTTCTTCGAGTTCCTGCAG                         GGCGACGCCGAGCGCTCGCTGGAGCGGCTGCACGAGGCGGC
genomic: ACCGGAACAGCGAGGTGGCGCGGCACAAGGGCTTCTTCGAGTTCCTGCAGgtgcgcttgg ... gctgtcgcagGGCGACGCCGAGCGCTCGCTGGAGCGGCTGCACGAGGCGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgacgaccttaccgggccttggctttaccttccctgtccgtcgctgtcgcagGGCGACGCCGAGCGCTCGCTGGAGCGGCTGCACGAGGCGGCGGAGAAGGACCTGGGCGCGCACGTGACCAAGGCGCGCAACCAGGCAGACGGCGGCTTCG
        accttac  putative branch site (score: 3)